Mod/Resc Parsimony Inference: Theory and application

Mod/Resc Parsimony Inference: Theory and application

Article history: Available online 2 February 2012

Phylogenetic inference and parsimony analysis.

Mod/Resc Parsimony Inference

We address in this paper a new computational biology problem that aims at understanding a mechanism that could potentially be used to genetically manipulate natural insect populations infected by inherited, intra-cellular parasitic bacteria. In this problem, that we denote by Mod/Resc Parsimony Inference, we are given a boolean matrix and the goal is to find two other boolean matrices with a mi...

Haplotype inference by maximum parsimony

MOTIVATION Haplotypes have been attracting increasing attention because of their importance in analysis of many fine-scale molecular-genetics data. Since direct sequencing of haplotype via experimental methods is both time-consuming and expensive, haplotype inference methods that infer haplotypes based on genotype samples become attractive alternatives. RESULTS (1) We design and implement an ...

Parsimony hierarchies for inductive inference

Freivalds defined an acceptable programming system independent criterion for learning programs for functions in which the final programs were required to be both correct and “nearly” minimal size, i.e, within a computable function of being purely minimal size. Kinber showed that this parsimony requirement on final programs limits learning power. However, in scientific inference, parsimony is co...